Create and add model to viewer — m_add

Create and add model to viewer, given molecular data and its format. If multi-model file is provided, use m_add_models adding atom data to the viewer as separate models.

m_add_model(
  id,
  data,
  format = c("pdb", "sdf", "xyz", "pqr", "mol2", "cif"),
  keepH = FALSE,
  options = list()
)

m_add_models(id, data, format = c("pdb", "sdf", "xyz", "pqr", "mol2", "cif"))

Arguments

id: R3dmol id or a r3dmol object (the output from r3dmol())
data: Path of input data path or a vector of data.
format: Input format ('pdb', 'sdf', 'xyz', 'pqr', or 'mol2').
keepH: Default to FALSE, whether to keep or strip hydrogens from imported model.
options: Format dependent options. Attributes depend on the input file format.

Value

R3dmol id or a r3dmol object (the output from r3dmol())

Examples

library(r3dmol)

# Single-model file with m_add_model() function
r3dmol() %>%
  m_add_model(data = pdb_6zsl, format = "pdb")


# Multi-model file with m_add_models() function
r3dmol() %>%
  m_add_models(data = sdf_multiple, "sdf") %>%
  m_zoom_to()


# Multi-model file with m_add_model() function
r3dmol() %>%
  m_add_model(data = sdf_multiple, "sdf") %>%
  m_zoom_to()


# Add model and keep hydrogens.
if (FALSE) {
r3dmol() %>%
  m_add_model(m_fetch_pdb("5D8V"), keepH = TRUE) %>%
  m_set_style(m_style_sphere()) %>%
  m_zoom_to() %>%
  m_spin()
}