Fetch Structure from PDB — m_fetch

Using specified pdb id, retrieved .pdb file using bio3d::get.pdb() function. Will always query the only PDB for structure, and not store on local drive. May take some time to fetch information, every time it is run.

m_fetch_pdb(pdb, save.pdb = FALSE, path = NULL)

Arguments

pdb: PDB ID string for structure.
save.pdb: Logical, whether or not to save the PDB to local drive. Will speed up subsequent load times. Defaults to FALSE
path: If save.pdb = TRUE, determines the location for file to be saved. Defaults to getwd().

Examples

library(r3dmol)
if (FALSE) {
r3dmol() %>%
  m_add_model(data = m_fetch_pdb("1bna")) %>%
  m_set_style(style = c(m_style_cartoon(), m_style_stick())) %>%
  m_zoom_to()
}