Specify Styling for Stick

Source: R/style.R

Styling options for the stick representation. Used inside m_add_style() and m_set_style().

m_style_stick(
  radius = 0.3,
  singleBonds = FALSE,
  colorScheme = NULL,
  color = NULL,
  opacity = 1,
  hidden = FALSE,
  colorfunc = NULL
)

Arguments

radius

Radius of sticks.

singleBonds

Draw all bonds as single bonds if TRUE.

colorScheme

Specify scheme to color the atoms by. Default is "default". Other choices are "Carbon", "ssPyMOL", "ssJmol", "Jmol", "default", "amino", "shapely", "nucleic", "chain", "chainHetatm", "prop".

color

Fixed coloring, overrides colorScheme.

opacity

Opacity, must be the same for all atoms in the model.

hidden

Do not show.

colorfunc

Allows the user to provide a function for setting the colorSchemes, written in javascript. Official Documentation

Examples

r3dmol() %>%
  m_add_model(data = pdb_1j72, format = "pdb") %>%
  m_set_style(style = m_style_stick(opacity = 0.4)) %>%
  m_zoom_to()